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Commit 37f9ecaa authored by Tomas Pettersson's avatar Tomas Pettersson 🏸
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added package structure

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.vscode/.ropeproject/config.py 0 → 100644
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# The default ``config.py``
# flake8: noqa
def set_prefs(prefs):
"""This function is called before opening the project"""
# Specify which files and folders to ignore in the project.
# Changes to ignored resources are not added to the history and
# VCSs. Also they are not returned in `Project.get_files()`.
# Note that ``?`` and ``*`` match all characters but slashes.
# '*.pyc': matches 'test.pyc' and 'pkg/test.pyc'
# 'mod*.pyc': matches 'test/mod1.pyc' but not 'mod/1.pyc'
# '.svn': matches 'pkg/.svn' and all of its children
# 'build/*.o': matches 'build/lib.o' but not 'build/sub/lib.o'
# 'build//*.o': matches 'build/lib.o' and 'build/sub/lib.o'
prefs['ignored_resources'] = ['*.pyc', '*~', '.ropeproject',
'.hg', '.svn', '_svn', '.git', '.tox']
# Specifies which files should be considered python files. It is
# useful when you have scripts inside your project. Only files
# ending with ``.py`` are considered to be python files by
# default.
#prefs['python_files'] = ['*.py']
# Custom source folders: By default rope searches the project
# for finding source folders (folders that should be searched
# for finding modules). You can add paths to that list. Note
# that rope guesses project source folders correctly most of the
# time; use this if you have any problems.
# The folders should be relative to project root and use '/' for
# separating folders regardless of the platform rope is running on.
# 'src/my_source_folder' for instance.
#prefs.add('source_folders', 'src')
# You can extend python path for looking up modules
#prefs.add('python_path', '~/python/')
# Should rope save object information or not.
prefs['save_objectdb'] = True
prefs['compress_objectdb'] = False
# If `True`, rope analyzes each module when it is being saved.
prefs['automatic_soa'] = True
# The depth of calls to follow in static object analysis
prefs['soa_followed_calls'] = 0
# If `False` when running modules or unit tests "dynamic object
# analysis" is turned off. This makes them much faster.
prefs['perform_doa'] = True
# Rope can check the validity of its object DB when running.
prefs['validate_objectdb'] = True
# How many undos to hold?
prefs['max_history_items'] = 32
# Shows whether to save history across sessions.
prefs['save_history'] = True
prefs['compress_history'] = False
# Set the number spaces used for indenting. According to
# :PEP:`8`, it is best to use 4 spaces. Since most of rope's
# unit-tests use 4 spaces it is more reliable, too.
prefs['indent_size'] = 4
# Builtin and c-extension modules that are allowed to be imported
# and inspected by rope.
prefs['extension_modules'] = []
# Add all standard c-extensions to extension_modules list.
prefs['import_dynload_stdmods'] = True
# If `True` modules with syntax errors are considered to be empty.
# The default value is `False`; When `False` syntax errors raise
# `rope.base.exceptions.ModuleSyntaxError` exception.
prefs['ignore_syntax_errors'] = False
# If `True`, rope ignores unresolvable imports. Otherwise, they
# appear in the importing namespace.
prefs['ignore_bad_imports'] = False
# If `True`, rope will insert new module imports as
# `from <package> import <module>` by default.
prefs['prefer_module_from_imports'] = False
# If `True`, rope will transform a comma list of imports into
# multiple separate import statements when organizing
# imports.
prefs['split_imports'] = False
# If `True`, rope will sort imports alphabetically by module name
# instead of alphabetically by import statement, with from imports
# after normal imports.
prefs['sort_imports_alphabetically'] = False
def project_opened(project):
"""This function is called after opening the project"""
# Do whatever you like here!
coastline_HELCOM_82214.dat 0 → 100644
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demo/376899fb-0dcd-4334-b625-1460db468cc9/0output.json 0 → 100644
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{"type":"FeatureCollection","crs":{"type":"name","properties":{"name":"EPSG:4326"}},"properties":{"status":"PARTIAL","uuid":"376899fb-0dcd-4334-b625-1460db468cc9","simulation":{"startDate":1510567200000,"stopDate":1510578000000,"mode":"Normal","forecast":"NEMO","forwardCalculation":true,"amount":"100","amountUnit":"m3","oilclass":"Oil classes","substance":"Medium oils (100-1000 cSt)","fresh":true,"instantaneous":true,"uncertainty":false,"winddrag":"0.00","depth":"0","duration":"24","durationUnit":"hours"}},"features":[]}
\ No newline at end of file
demo/376899fb-0dcd-4334-b625-1460db468cc9/12output.json 0 → 100644
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demo/376899fb-0dcd-4334-b625-1460db468cc9/13output.json 0 → 100644
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demo/376899fb-0dcd-4334-b625-1460db468cc9/4output.json 0 → 100644
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demo/376899fb-0dcd-4334-b625-1460db468cc9/8output.json 0 → 100644
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demo/376899fb-0dcd-4334-b625-1460db468cc9/cloudtrack.dat 0 → 100644
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2017-11-13 10:00 26.9471 60.3559 0.0000
2017-11-13 10:15 26.9485 60.3557 0.0000
2017-11-13 10:30 26.9498 60.3556 0.0008
2017-11-13 10:45 26.9512 60.3555 0.0000
2017-11-13 11:00 26.9526 60.3553 0.0000
2017-11-13 11:15 26.9539 60.3552 0.0000
2017-11-13 11:30 26.9553 60.3551 0.0037
2017-11-13 11:45 26.9567 60.3549 0.0000
2017-11-13 12:00 26.9581 60.3548 0.0021
2017-11-13 12:15 26.9595 60.3546 0.0063
2017-11-13 12:30 26.9610 60.3543 0.0077
2017-11-13 12:45 26.9625 60.3541 0.0065
2017-11-13 13:00 26.9639 60.3539 0.0018
demo/376899fb-0dcd-4334-b625-1460db468cc9/coordinates.dat 0 → 100644
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1
1.0
60.35612797806093 26.961650443838113
60.34804872455907 26.934164170849897
60.35773173384632 26.93584015405431
60.36245765251777 26.95838516721654
>
demo/376899fb-0dcd-4334-b625-1460db468cc9/default_controlparameter.nml 0 → 100644
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&CTRLPAR
! MESSAGEPASSER
CONTROLPARAMETER%MESSAGEPASSER%DIRECT = 0, ! EDIT, ToScreen = -1, ToLog = 0, ToScreenAndLog = 2
CONTROLPARAMETER%MESSAGEPASSER%INFOLOGFILEPATH = './', ! Consider
CONTROLPARAMETER%MESSAGEPASSER%INFOLOGFILENAME = 'info.txt',
CONTROLPARAMETER%MESSAGEPASSER%WARNINGLOGFILEPATH = './', ! Consider
CONTROLPARAMETER%MESSAGEPASSER%WARNINGLOGFILENAME = 'warning.txt',
CONTROLPARAMETER%MESSAGEPASSER%ERRORLOGFILEPATH = './', ! Consider
CONTROLPARAMETER%MESSAGEPASSER%ERRORLOGFILENAME = 'error.txt',
! APP
ControlParameter%AppInterface_App%DriftModel%SlipBoundaryProblemIsFixed = .false., ! A temporary controlparameter until the slip boundary problem is fixed.
! PADM
CONTROLPARAMETER%PADM%USERUNID = T, ! EDIT
CONTROLPARAMETER%PADM%RUNID = '"RunId"', ! EDIT
CONTROLPARAMETER%PADM%USEFIXEDRANDOMSEED = F, ! EDIT
!CONTROLPARAMETER%PADM%STARTTIME ! Assigned in code
!CONTROLPARAMETER%PADM%STOPTIME ! Assigned in code
CONTROLPARAMETER%PADM%FIXEDTIMESTEP = T,
CONTROLPARAMETER%PADM%TIMESTEP%SECONDS = 60.0,
!CONTROLPARAMETER%PADM%NUMBEROFPARTICLES ! Assigned in code
!CONTROLPARAMETER%PADM%TIMEDIR ! Assigned in code
CONTROLPARAMETER%PADM%STORETYPETIME = T,
CONTROLPARAMETER%PADM%STOREPERIODTIME%SECONDS = 900.0,
CONTROLPARAMETER%PADM%STORETYPECOUNT = F,
CONTROLPARAMETER%PADM%STOREPERIODCOUNT = 0,
! BOUNDARY
!CONTROLPARAMETER%BOUNDARY%BOUNDARYACTION ! Assigned in code
! FORCING
!CONTROLPARAMETER%FORCING%ACTIVEVELOCITY ! Assigned in code
CONTROLPARAMETER%FORCING%USESTOKESVELOCITY = T, ! EDIT
CONTROLPARAMETER%FORCING%REDUCESTOKESDUETOICE = T, ! EDIT
CONTROLPARAMETER%FORCING%USETURBULENCEVELOCITY = T, ! EDIT
CONTROLPARAMETER%FORCING%USEUNCERTAINTYSPREADING = F, ! Not implemented, should be assigned in code
! CONTROLPARAMETER%FORCING%USEICEDRIFTVELOCITY = F, ! Moved to Substance%Oil
! CONTROLPARAMETER%FORCING%ICECONCENTRATIONDRIFTTHRESHOLD%UNITONE = 0.7, ! Moved to Substance%Oil
CONTROLPARAMETER%FORCING%ICEDENSITY%KGPERMETER3 = 900.,
CONTROLPARAMETER%FORCING%TURBULENCE%MINDISSIPATIONFACTOR%PERSECOND = 5.0E-4, ! Recommended value
! SUBSTANCE
!CONTROLPARAMETER%SUBSTANCE%SUBSTANCETYPE ! Assigned in code
!CONTROLPARAMETER%SUBSTANCE%SUBSTANCENAME ! Assigned in code
!CONTROLPARAMETER%SUBSTANCE%USESUBSTANCEVELOCITY ! Assigned in code
!CONTROLPARAMETER%SUBSTANCE%SURFACEWINDDRAG%UNITONE ! Assigned in code
!CONTROLPARAMETER%SUBSTANCE%USEOBJECTSBUOYANCYVELOCITY ! Assigned in code
CONTROLPARAMETER%SUBSTANCE%BUOYANCYVELOCITYCOEFF%UNITONE = 5.0E-003,
! SUBSTANCE%OIL
!CONTROLPARAMETER%SUBSTANCE%OIL%WEATHERINGCODE ! Assigned in code
CONTROLPARAMETER%SUBSTANCE%OIL%OILDATAFILEPATH = './', ! Consider
!CONTROLPARAMETER%SUBSTANCE%OIL%OILDATAFILENAME ! Assigned in code
!CONTROLPARAMETER%SUBSTANCE%OIL%DURATION ! Assigned in code
!CONTROLPARAMETER%SUBSTANCE%OIL%FRESHOIL ! Assigned in code
CONTROLPARAMETER%SUBSTANCE%OIL%WEATHEREDAGE%SECONDS = 864000.0,
CONTROLPARAMETER%SUBSTANCE%OIL%GRAVSPREADCOEFF%UNITONE = 0.13,
CONTROLPARAMETER%SUBSTANCE%OIL%DOCALCEVAPORATION = T, ! EDIT
CONTROLPARAMETER%SUBSTANCE%OIL%MAXEXPEVAP%UNITONE = 3360.0,
CONTROLPARAMETER%SUBSTANCE%OIL%DOCALCEMULSIFICATION = T, ! EDIT
CONTROLPARAMETER%SUBSTANCE%OIL%MAXEXPEMULS%UNITONE = 3360.0,
CONTROLPARAMETER%SUBSTANCE%OIL%DOCALCOILDISPERSION = T, ! EDIT
CONTROLPARAMETER%SUBSTANCE%OIL%NSIZECLASSES = 20,
CONTROLPARAMETER%SUBSTANCE%OIL%LOWERDROPSIZELIMIT%METER = 1.0E-005,
CONTROLPARAMETER%SUBSTANCE%OIL%UPPERDROPSIZELIMIT%METER = 2.0E-003,
CONTROLPARAMETER%SUBSTANCE%OIL%TESTDISP = F,
CONTROLPARAMETER%SUBSTANCE%OIL%SUBSURFACERELEASEDROPSIZEMEAN%METER = 5.0E-003,
CONTROLPARAMETER%SUBSTANCE%OIL%SUBSURFACERELEASEDROPSIZESTD%METER = 2.0E-003,
CONTROLPARAMETER%SUBSTANCE%OIL%SUBSURFACERELEASEDROPSIZEMIN%METER = 1.0E-005,
CONTROLPARAMETER%SUBSTANCE%OIL%TERMINALEMULTHICKNESSCOEFF%UNITONE = 8.0E-003,
CONTROLPARAMETER%SUBSTANCE%OIL%MAXTERMINALEMULTHICKNESS%METER = 0.1,
CONTROLPARAMETER%SUBSTANCE%OIL%NOTDISPERSEDPARTICLEDIAMETER%METER = 1.0E-004,
CONTROLPARAMETER%SUBSTANCE%OIL%USESURFACEOILBUOYANCY = T, ! EDIT
CONTROLPARAMETER%SUBSTANCE%OIL%USENEWICEDRIFTPARAMETERIZATION = T, ! EDIT
CONTROLPARAMETER%SUBSTANCE%OIL%USEICEDRIFTVELOCITY = T, ! Moved from Forcing. Only used in old ice drift parameterization
CONTROLPARAMETER%SUBSTANCE%OIL%ICECONDRIFTTHRESHOLD%UNITONE = 0.8, ! Set = 0.7 if using old ice drift parameterization
CONTROLPARAMETER%SUBSTANCE%OIL%LOWICECONDRIFTTHRESHOLD%UNITONE = 0.3,
CONTROLPARAMETER%SUBSTANCE%OIL%OILBELOWICE = T,
CONTROLPARAMETER%SUBSTANCE%OIL%ICEFLOESIZE%METER = 1000., ! EDIT
CONTROLPARAMETER%SUBSTANCE%OIL%ICEVELTHRESHOLD%METERPERSEC = 0.2 ! EDIT
CONTROLPARAMETER%SUBSTANCE%OIL%UNDERICESTORAGEFACTOR = 0.021 ,
! COLUMNINFO
CONTROLPARAMETER%COLUMNINFO%FILEPATH = './', ! Consider
CONTROLPARAMETER%COLUMNINFO%FILENAME = 'columninfoarray_helcom.dat', ! EDIT
! HDINTERFACE
CONTROLPARAMETER%HDINTERFACE%ROTATEDGRID = F, ! EDIT
CONTROLPARAMETER%HDINTERFACE%TIMEVARYINGGRID = F, ! EDIT
CONTROLPARAMETER%HDINTERFACE%HDINTERPOLATION = 1, ! EDIT, NoInterpolation = 1, LinearInterpolation = 2
CONTROLPARAMETER%HDINTERFACE%VERCOORDNEXTCELLMETHOD = 1 ! EDIT, VerPositionRetaining = 1, DepthRetaining = 2, RelDepthRetaining = 3, &
! PADMVerCoordRetaining = 4, PADMVerCoordUppermostCell_VerPositionRetaining = 5
CONTROLPARAMETER%HDINTERFACE%SURFACEFORCINGCACHE = 2, ! EDIT, SimpleCache = 1, DynamicallyGrownFullCache = 2
! HDINTERFACE_HD
! Shall be set for the specific HD
ControlParameter%HDInterface_HD%ForcingFilePath = '/data/dmzshared/prodtest/stw/forcing/HELCOM_NEMO',
ControlParameter%HDInterface_HD%ForcingPrefix = 'NS02_1h_',
ControlParameter%HDInterface_HD%ForcingTSufix = '_grid_T.nc',
ControlParameter%HDInterface_HD%ForcingUSufix = '_grid_U.nc',
ControlParameter%HDInterface_HD%ForcingVSufix = '_grid_V.nc',
ControlParameter%HDInterface_HD%ForcingWSufix = '_grid_W.nc',
ControlParameter%HDInterface_HD%ForcingSSufix = '_grid_SURF.nc',
ControlParameter%HDInterface_HD%ForcingTimeKey = 'time_counter',
ControlParameter%HDInterface_HD%ForcingTempKey = 'temperature',
ControlParameter%HDInterface_HD%ForcingDensityKey = 'Dens',
ControlParameter%HDInterface_HD%ForcingTKEKey = 'TKE',
ControlParameter%HDInterface_HD%ForcingDTKEKey = 'dTKE',
ControlParameter%HDInterface_HD%ForcingCurrUKey = 'uos',
ControlParameter%HDInterface_HD%ForcingCurrVKey = 'vos',
ControlParameter%HDInterface_HD%ForcingWindUKey = 'uwind',
ControlParameter%HDInterface_HD%ForcingWindVKey = 'vwind',
ControlParameter%HDInterface_HD%ForcingThicknessKey = 'CellThi',
ControlParameter%HDInterface_HD%ForcingIceConKey = 'icefrac',
ControlParameter%HDInterface_HD%ForcingIceThickKey = 'icethic',
ControlParameter%HDInterface_HD%ForcingIceUKey = 'uice',
ControlParameter%HDInterface_HD%ForcingIceVKey = 'vice',
ControlParameter%HDInterface_HD%ForcingFileIntervall%Seconds = 21600,
ControlParameter%HDInterface_HD%ForcingFileLength%Seconds = 864000,
ControlParameter%HDInterface_HD%NemoMeshFilePath = '/data/dmzshared/prodtest/stw',
ControlParameter%HDInterface_HD%NemoMeshFileName = 'mesh_NS02_long_30lvl.nc',
ControlParameter%HDInterface_HD%LonDimKey = 'x',
ControlParameter%HDInterface_HD%LatDimKey = 'y',
ControlParameter%HDInterface_HD%LevDimKey = 'lev',
ControlParameter%HDInterface_HD%TimeDimKey = 'time',
ControlParameter%HDInterface_HD%DxKey = 'e1t',
ControlParameter%HDInterface_HD%DyKey = 'e2t',
ControlParameter%HDInterface_HD%DzKey = 'e3t_1d',
ControlParameter%HDInterface_HD%NLevKey = 'nav_lev',
ControlParameter%HDInterface_HD%GLamFKey = 'glamf',
ControlParameter%HDInterface_HD%GPhiFKey = 'gphif',
ControlParameter%HDInterface_HD%TMaskKey = 'e3t_0'
ControlParameter%HDInterface_HD%GDepWKey = 'gdept_0'
! APPINTERFACE
!CONTROLPARAMETER%APPINTERFACE%CALCULATIONTYPE ! Assigned in code
!CONTROLPARAMETER%APPINTERFACE%DEPTHRELEASED ! Assigned in code
! APPINTERFACE_APP
! In this case PADMWS_V2
CONTROLPARAMETER%APPINTERFACE_APP%DRIFTMODEL%SETTINGSFILEPATH = './', ! Consider
CONTROLPARAMETER%APPINTERFACE_APP%DRIFTMODEL%SETTINGSFILENAME = 'guisettings.dat',
CONTROLPARAMETER%APPINTERFACE_APP%DRIFTMODEL%PARTICLEFILEPATH = './', ! Consider
CONTROLPARAMETER%APPINTERFACE_APP%DRIFTMODEL%PARTICLEFILENAME = 'particletrack.dat',
CONTROLPARAMETER%APPINTERFACE_APP%DRIFTMODEL%CLOUDFILENAME = 'cloudtrack.dat',
CONTROLPARAMETER%APPINTERFACE_APP%DRIFTMODEL%TABLEFILEPATH = './', ! Consider
CONTROLPARAMETER%APPINTERFACE_APP%DRIFTMODEL%TABLEHEADERFILENAME = 'tableheader.dat',
CONTROLPARAMETER%APPINTERFACE_APP%DRIFTMODEL%RESULTTABLEFILENAME = 'resulttable.dat'
/
demo/376899fb-0dcd-4334-b625-1460db468cc9/driftmodel.properties 0 → 100644
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driftmodel=driftmodel.x
logfile=driftmodel.stdout_stderr
resulttimestep=900
domain=HELCOM
forcingtimestep=3600
demo/376899fb-0dcd-4334-b625-1460db468cc9/guisettings.dat 0 → 100644
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CONTINUED_CASE
F
CHANGE_CENTER_POSITION
F
CHANGE_CENTER_POSITION_LAT
CHANGE_CENTER_POSITION_LON
FORECASTMETHOD
NEMO
OUTLETTYPE
AREA
FORWARDCALCULATION
T
STARTTIME
2017
11
13
10
00
ENDTIME
2017
11
13
13
00
CALCTYPE
Oil classes
SUBSTANCE
Medium oils (100-1000 cSt)
FRESH
T
EXTRA WIND DRAG (%)
0.00
NROFOUTLETPOINTS
4
OUTLETFILE
coordinates.dat
DEPTH
0
INSTANTANEOUS
T
AMOUNT
100
AMOUNTUNIT
m3
DURATION
24
DURATIONUNIT
hours
PRESCRIBEDCURRENT
F
UNCERTAINTY
F
CALCULATIONMODE
Normal
ISOPOINTOUTPUT
F
ISOPOINTS_DURING_SIMULATION
F
ISOLEVELFILE
isolevels.dat
NUMBER_OF_NEAREST_NEIGHBOURS
25
GENERATE DENSITY NETCDF-FILE
F
NETCDF FILE NAME
density.nc
OIL SPILL ID
NOT_USED
NETCDF DENSITY UNIT
ton/km2
NUMBER OF GRIDPOINTS ALONG THE LONGITUDE DIMENSION [max 500]
120
NUMBER OF GRIDPOINTS ALONG THE LATITUDE DIMENSION [max 300]
100
NUMBER OF GRIDPOINTS ALONG THE DEPTH DIMENSION [max 35]
4
demo/376899fb-0dcd-4334-b625-1460db468cc9/info.txt 0 → 100644
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0 Wrapper starts at 2017-11-13 10:15:06.794
9999 StartLoad_HD: Loaded forcing for time 20171113103000
0 Increased surface forcing cache to 10
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1 2458071 46680 0.0000000000000000
1 2458071 46740 0.0000000000000000
9999 ShiftLoad_HD: Loaded forcing for time 20171113133000
1 2458071 46800 0.0000000000000000
0 PADM CPU usage5 seconds and 836 milliseconds
0 PADM duration 14 seconds and 435 milliseconds
0 Wrapper duration 14 seconds and 447 milliseconds
demo/376899fb-0dcd-4334-b625-1460db468cc9/input.json 0 → 100644
View file @ 37f9ecaa
{
"type": "FeatureCollection",
"features": [{
"type": "Feature",
"properties": {
"uuid": "376899fb-0dcd-4334-b625-1460db468cc9",
"domain": "HELCOM",
"model": "NEMO",
"type": "oil",
"subtype": "instant",
"meanLng": 26.947907307344003,
"meanLat": 60.35525318853842,
"simulation": {
"startDate": 1510567200000,
"stopDate": 1510578000000,
"mode": "Normal",
"forecast": "NEMO",
"forwardCalculation": true,
"amount": "100",
"amountUnit": "m3",
"oilclass": "Oil classes",